I have implemented an MD5-based scheme similar to what was described. At the time, MD5/hash extension attacks were not as well-known as they are today, at least I had not heard of them and I read up on MD5 before I designed the sytem, so another worry is that what is considered secure today might not be secure tomorrow.
> another worry is that what is considered secure today might not be secure tomorrow
If history is anything to go by then what is secure today will definitely be insecure tomorrow. No real solution to this AFAIK. If vulnerabilities in the crypto itself doesn't get you eventually, quantum computing will.