From the article: The thing is, in that particular explosion, those guys would have been in a pretty safe position. The bomb itself was a small one (by nuclear standards — 2 kilotons) and it was way, way above their heads. They weren't in a zone to be too affected by the immediate radiation. The bomb was small enough and high enough that it wouldn't have sucked up dust to produce much fallout. The remaining cloud would have been full of (nasty) fission products, but it would have been extremely hot and most of it would have stayed aloft until it cooled down, by which point it probably would have been spread more diffusely.
It's both wonderful and creepy. They've restored some beautiful old mechanical computers which are works of art in my eyes, but they also point out that the missiles were capable of carrying nuclear warheads, "but they neither confirm nor deny" whether the missiles at this facility ever had them installed. They _do_ however point out that not only were the missiles capable of taking down incoming aircraft heading towards San Francisco, but they were also pre-targetted at Sacramento… "Just in case" (I'm sure the guys who run the tours are pretty good at setting just the right tone with their stories, but they certainly left me with some interesting impressions).
I _highly_ recommend the tour of SF88 to anybody who's got an afternoon spare in San Francisco.
The distinct impression the tour story gave me was "in case of Russian invasion". There was even some explanation about which versions of the Nike missile had sufficient range to get to Sacramento.
Like I said, there's some distinctly creepy bits about that whole thing.