I'd argue that having the event system semantics layered on top of a sql database is a big benefit when you have an immature product, since you have an incredibly powerful escape hatch to jump in and fire off a few queries to fix problems. Kafka's visibility for debugging is pretty poor in my experience.
My issues typically with layering an event system on top of a db is replication and ownership of that event. Kafka makes some very nice guarantees about giving best attempt to make sure only one process works on something at a time inside of a consumer group. You have to build a system in the db using locks and different things that are poor substitutes.
If you are having trouble debugging kafka you could use a connector to put the data into the database/file to also debug, or a db streamer. You can also use the built in cli tools to scroll along. I have had very good luck with using both of those to find out what is going wrong. Also kafka will basically by default keep all the messages for the past 7 days so you can play it back if you need to by moving the consumer offsets. IF you are trying to use kafka like a db and change messages on the fly you will have a bad time of it. Kafka is meant to be a here is something that happened and some data. Changing that data after the fact would in the kafka world be another event. In some types of systems that is a very desirable property (such as audit heavy cultures, banks, medical, etc). Now also kafka can be a real pain if you are debugging and messup a schema or produce a message that does not fit into the consumer. Getting rid of that takes some poor cli trickery when in a db it is a delete call.
Also kafka is meant for a distributed system event based worker systems (typically some sort of microservice style system). If you are early on you more than likely not building that yet. Just dumping something into a list in a table and polling on that list is a very effective way for something that is early on or maybe even forever. But once you add in replication and/or multiple clients looking at that same task list table you will start to see the issues quickly.
Using an event system like a db system and yes it will feel broken. Also vice versa. You can do it. But like you are finding out those edge cases are a pain and make you feel like 'bah its easier to do it this way'. In some cases yes. In your case you have a bad state in your event data. You are cleaning it up with some db calls. But what if instead you had an event that did that for you?