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Maybe if you ran the test 100 times and did some pileups by position it would be usable in comparison to WGS



If you want to see what a real run looks like, here is a little gist of my last Nanopore run, raw basecall -> alignment (no consensus)

https://gist.github.com/Koeng101/abc674e1acd575646748afcbcc7...




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