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Using terminal commands (w/ "lots of piping") for reproducable analysis that you intend to show to others is not recommended. More importantly, it increases the chance of making a mistake.

There's nothing wrong with GUIs for statistical analysis.




I disagree, sort of, a little bit.

If I'm writing a shell pipeline for data analysis, I rewrite it as a Makefile. Make is a great tool for this sort of thing.

(Use whatever works as long as it's a single command to reproducibly rerun an analysis.)




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